scHicMergeMatrixBins¶
Merges bins from a Hi-C matrix. For example, using a matrix containing 5kb bins, a matrix of 50kb bins can be derived using –numBins 10.
usage: scHicMergeMatrixBins --matrix matrix.scool --outFileName OUTFILENAME
--numBins int [--runningWindow]
[--threads THREADS] [--help] [--version]
Required arguments¶
- --matrix, -m
Matrix to reduce in scool format.
- --outFileName, -o
File name to save the resulting matrix. The output is also a .scool file. But don’t add the suffix.
- --numBins, -nb
Number of bins to merge.
Optional arguments¶
- --runningWindow
set to merge for using a running window of length –numBins. Must be an odd number.
Default: False
- --threads, -t
Number of threads. Using the python multiprocessing module.
Default: 4
- --version
show program’s version number and exit