scHicCreateBulkMatrix

usage: scHicCreateBulkMatrix --matrix scool scHi-C matrix --outFileName
                             OUTFILENAME [--threads THREADS] [--help]
                             [--version]

Required arguments

--matrix, -m

The single cell Hi-C interaction matrices to cluster. Needs to be in scool format

--outFileName, -o

File name to save the exported cooler matrix. Please add .cool appendix.

Optional arguments

--threads, -t

Number of threads. Using the python multiprocessing module.

Default: 4

--version

show program’s version number and exit

../../_images/nagano_bulk.png

Nagano 2017 1 Mb resolution bulk matrix.