scHicCorrectMatrices

Correct each matrix of the given scool matrix with KR correction.

usage: scHicCorrectMatrices --matrix matrix.h5 --outFileName OUTFILENAME
                            [--threads THREADS] [--help] [--version]

Required arguments

--matrix, -m

Matrix to reduce in h5 format.

--outFileName, -o

File name to save the resulting matrix, please add the scool prefix.

Optional arguments

--threads, -t

Number of threads. Using the python multiprocessing module.

Default: 4

--version

show program’s version number and exit