scHicCreateBulkMatrix¶
usage: scHicCreateBulkMatrix --matrix scool scHi-C matrix --outFileName
OUTFILENAME [--threads THREADS] [--help]
[--version]
Required arguments¶
- --matrix, -m
The single cell Hi-C interaction matrices to cluster. Needs to be in scool format
- --outFileName, -o
File name to save the exported cooler matrix. Please add .cool appendix.
Optional arguments¶
- --threads, -t
Number of threads. Using the python multiprocessing module.
Default: 4
- --version
show program’s version number and exit
Nagano 2017 1 Mb resolution bulk matrix.